PHYTOMap in Arabidopsis root tips

Low-cost spatial transcriptomic study on whole-mount plant tissue.

Authors: Tatsuya Nobori et al. Published on protocols. io.
Available via CC-BY 4.0 license

COPILOT package for scRNA-seq analysis

Fast scRNA-seq raw data processing using scKB and non-arbitrary quality control.

Authors: Che-Wei Hsu et al. Published on Star Protocols.
Available under the Creative Commons CC-BY-NC-ND license

scRNA-seq data Integration and Annotation

One Jupyter notebook example, showing how to do scRNA-seq data integration and how to use marker gene expression to do cell type annotation.

Author:  Che-Wei Hsu.
Publicly available on Github website: https://github.com/zhumy09/scRNA-seq-for-rice/tree/main/Jupyter_Note_Books